Citation: 

Beier S, Thiel T, Münch T, Scholz U, Mascher M (2017) MISA-web: a web server for microsatellite prediction. Bioinformatics 33 2583–2585. dx.doi.org/10.1093/bioinformatics/btx198


Thiel T, Michalek W, Varshney R, Graner A (2003) Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theoretical and Applied Genetics 106 (3): 411-422

 
 

MISA-web

<project name>.statistics: Summarizes different statistics as the frequency of a specific microsatellite type according to the unit size or individual motifs.

<project name>.misa: The localization and type of identified microsatellite(s) are stored in a tablewise manner. In case of primer design it is recommended to use this output and the provided guidelines in section primer design.

<sequence id>.gff: Each query sequence where at least one microsatellite has been identified will produce one file in GFF3 format.